Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 10 threads; openjdk version "11.0.11" 2021-04-20; /Data/UserData/FairWind/Ya.Cloud/core/pipeline/scripts/../juicer/scripts/juicer.sh -t 10 -D /Data/UserData/FairWind/Ya.Cloud/core/pipeline/scripts/../juicer -g mm10 -z /Data/DataBases/mm10/mm10_canonic.fa -p /Data/DataBases/mm10/mm10_canonic.chrom.sizes -s DpnII -y /Data/UserData/FairWind/Ya.Cloud/core/pipeline/data/restriction_sites/RestrictionSites_DpnII_mm10.txt -d /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR6024979-SRR6024980/__temp__                                                                                                                                                                                                                                                                                                                                                                                                                                                  
Sequenced Read Pairs:  197,078,733
 Normal Paired: 187,068,655 (94.92%)
 Chimeric Paired: 7,355,541 (3.73%)
 Chimeric Ambiguous: 789,755 (0.40%)
 Unmapped: 1,864,782 (0.95%)
 Ligation Motif Present: 55,532 (0.03%)
Alignable (Normal+Chimeric Paired): 194,424,196 (98.65%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2021-09-06T17:30:21,375]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 48,817,162 (24.77%)
PCR Duplicates: 145,607,034 (73.88%)
Optical Duplicates: 0 (0.00%)
Library Complexity Estimate: 49,823,399
Intra-fragment Reads: 23,141,468 (11.74% / 47.40%)
Below MAPQ Threshold: 8,021,388 (4.07% / 16.43%)
Hi-C Contacts: 17,654,306 (8.96% / 36.16%)
 Ligation Motif Present: 10,048  (0.01% / 0.02%)
 3' Bias (Long Range): 77% - 23%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 4,612,345  (2.34% / 9.45%)
Intra-chromosomal: 13,041,961  (6.62% / 26.72%)
Short Range (<20Kb): 8,914,813  (4.52% / 18.26%)
Long Range (>20Kb): 4,127,083  (2.09% / 8.45%)